May 26, 2018

Single molecule sequence assembler

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing such as the PacBio RS II/Sequel or Oxford Nanopore MinION.

Canu is a hierarchical assembly pipeline which runs in four steps

Detect overlaps in high-noise sequences using MHAP

Generate corrected sequence consensus

Trim corrected sequences

Assemble trimmed corrected sequences

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