Stacks

Software pipeline for building loci from short-read sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

WWW http//catchenlab.life.illinois.edu/stacks/