May 26, 2018

Multiple DNA or protein sequence alignment package

From the website

T-Coffee is a multiple sequence alignment package. Given a set of sequences Proteins or DNA, T-Coffee generates a multiple sequence alignment.

Related publications

  • 3DCoffee Combining Protein Sequences and Structures within Multiple Sequence Alignments. O. O‚ÄôSullivan, K Suhre, C. Abergel, D.G. Higgins, C. Notredame. Journal of Molecular Biology, Vol 340, pp385-395, 2004
  • T-Coffee A novel method for multiple sequence alignments. C.Notredame, D. Higgins, J. Heringa, Journal of Molecular Biology,Vol 302, pp205-217,2000
  • COFFEE A New Objective Function For Multiple Sequence Alignmnent. C. Notredame, L. Holme and D.G. Higgins,Bioinformatics,Vol 14 5 407-422,1998

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