Py-scientific

Jul 20, 2023

Collection of Python modules for scientific computing

ScientificPython is a collection of Python modules that are useful for scientific computing. In this collection you will find modules that cover basic geometry vectors, tensors, transformations, vector and tensor fields, quaternions, automatic derivatives, linear interpolation, polynomials, elementary statistics, nonlinear least-squares fits, unit calculations, Fortran-compatible text formatting, 3D visualization via VRML, and two Tk widgets for simple line plots and 3D wireframe models.

WWW http//dirac.cnrs-orleans.fr/ScientificPython/


Let’s dive into the fascinating world of FreeBSD and explore one of the most useful ports - Py-scientific. This is a versatile software package that’s a part of the broader category of Math ports. The Py-scientific port is a remarkable tool for scientific computation in Python, and is a must-have in your FreeBSD systems if you have a penchant for computations and numerical analysis.

For this article, our primary focus will be on how to install, use, and reap the multiple benefits of Py-scientific on FreeBSD.

What is Py-scientific?

Py-scientific is a collection of Python modules that are particularly beneficial for scientific computing. You can say it’s the hub of mathematical libraries and algorithms. It significantly simplifies numerical computing, making it more accessible and user-friendly.

These modules provide excellent support for tasks such as

  • Array operations
  • Numerical integration
  • Linear algebra
  • Optimization
  • Interpolation and smoothing
  • Fourier transpositions
  • Ordinary differential equation solving

This is just the tip of the iceberg; Py-scientific offers multiple benefits that we can explore later on.

How to install Py-scientific on FreeBSD

In FreeBSD, the software applications are usually installed from the FreeBSD ports collection. Py-scientific as a FreeBSD port would allow you to install it using the ports system.

First and foremost, you will need to fetch the latest package of the ports tree. You can do this by executing a simple command

pkg update

You can then install Py-scientific using the following command

cd /usr/ports/math/py-scientific/ && make install clean

Submitting this command will navigate you to the directory of the Py-scientific port and execute the “make install clean” command. This command will install the port and clean up the work directory after the installation.

Alternatively, you can also install Py-scientific as a binary package. The respective command for that is

pkg install py36-scientific

Please note the prefix “py36” refers to the Python version. Adjust this depending on your Python version and preferences.

Using Py-scientific

Now that we have installed Py-scientific, let’s have a quick walk-through of how to use it for different purposes.

  1. Array Operations

    Array manipulations are fundamental to scientific computing. The Numeric module in Py-scientific comes in handy for dealing with numerical arrays. Here’s an example

from Numeric import *
A = array[[2.1, 3.5], [1.4, 7.9]]
print "A[0,1] =", A[0,1]
  1. Numerical Integration

    Py-scientific has a sub-module called “Integration”. This allows for efficient numerical integration, as seen in the snippet below

from Scientific.Functions.LeastSquares import *
from Scientific.Geometry import Vector
from Numeric import *

Note that this module relies heavily on the Numeric module for representing and handling arrays.

  1. Optimization

    The Optimization module lets you solve optimization problems concisely. Below is an example

from Scientific import N 
def fx
  return N.sinx**2
from Scientific.Functions import Minimization
x0 = 1.0 # initial guess
xmin = Minimization.fminf, x0
print xmin

These are just illustrative examples. Py-scientific is a vast library with countless possibilities.

Benefits of Py-scientific

Python, in itself, boasts widely-used, high-level data structures, and a simple but effective approach to object-oriented programming. The power of Python is evident in its ease of use and its elegant syntax, which makes it an ideal language for scriptwriting and rapid application development.

When this simplicity of Python blends with the robust mathematical capability of Py-scientific, you gain a formidable tool for scientific computations. Here are some primary benefits

  1. Ease of Use

    Py-scientific’s syntax is clear and intuitive, mirroring that of the Python programming language. Consequently, it is relatively easy for developers to grasp, thus lowering the learning curve.

  2. Performance

    Py-scientific has been optimized for performance, making mathematical computations incredibly smooth and efficient.

  3. Flexibility

    With a wide array of modules and functions, Py-scientific provides you with an ample arsenal to tackle any scientific computation task.

  4. Interoperability

    Py-scientific can interact smoothly with other FreeBSD ports and packages, ensuring a seamless operational flow.

Do check out other helpful FreeBSD [ports]https//freebsdsoftware.org/security/nmap.html, such as nmap for network security tasks, which are excellent additions to your computational toolkit.

In conclusion, Py-scientific is a vital tool that should not be overlooked by anyone interested or working with scientific computation. So if you’re a FreeBSD user wanting to dive deep into the world of mathematical analysis and scientific computation, do equip your arsenal with Py-scientific. Happy computing!


Checkout these related ports:
  • Zn_poly - C library for polynomial arithmetic
  • Zimpl - Language to translate the LP models into .lp or .mps
  • Zegrapher - Software for plotting mathematical objects
  • Zarray - Dynamically typed N-D expression system based on xtensor
  • Z3 - Z3 Theorem Prover
  • Yices - SMT solver
  • Yacas - Yet Another Computer Algebra System
  • Xtensor - Multi-dimensional arrays with broadcasting and lazy computing
  • Xtensor-python - Python bindings for xtensor
  • Xtensor-io - Xtensor plugin to read/write images, audio files, numpy npz and HDF5
  • Xtensor-blas - BLAS extension to xtensor
  • Xspread - Spreadsheet program for X and terminals
  • Xppaut - Graphical tool for solving differential equations, etc
  • Xplot - X11 plotting package
  • Xlife++ - XLiFE++ eXtended Library of Finite Elements in C++