FreeBSD.software
Home/biology/cytoscape

cytoscape

3.6.1

Software to visualize molecular interaction networks, gene expression

Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.

Origin: biology/cytoscape
Category: biology
Size: 1.23GiB
License: LGPL21
Maintainer: yuri@FreeBSD.org
Dependencies: 2 packages
Required by: 0 packages
Website: www.cytoscape.org
$pkg install cytoscape

Dependencies (2)

openjdk8bash

More in biology

htslib1.22
C library for high-throughput sequencing data formats
p5-BioPerl1.007008
Collection of Perl modules for bioinformatics
samtools1.22
Tools for manipulating next-generation sequencing data
biolibc0.2.7
Low-level high-performance bioinformatics library
bcftools1.22
Tools for manipulating next-generation sequencing data
bedtools2.31.1
Toolset for genome set arithmetic such as intersect, union
fastqc0.12.1
Quality control tool for high throughput sequence data
sra-tools3.3.0_2
NCBI's toolkit for handling data in INSDC Sequence Read Archives
bwa0.7.19
Burrows-Wheeler sequence aligner
libsbml5.20.5_1
API Library for Working with SBML File