fastq-trim

Lightening fast sequence read trimmer

Fastq-trim is a lightening fast read trimming tool for QA of DNA and RNA reads prior to analyses such as RNA-Seq. it runs in a fraction of the time required by popular trimmers and uses only a few megabytes of RAM, so it will run almost entirely in cache. The design supports adding any number of alignment functions, so it can be easily adapted to any trimming needs.