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mca-calling

0.1.0

Core tools for Mosaic Chromosomal Alteration event calling

The mca-calling meta-port provides the core tools needed for performing a typical mCA (Mosaic Chromosomal Alteration) analysis, including conversion of SRA VCF files to a format suitable for haplohseq and MoCha, and haplohseq and MoCha event calling. The GWAS analysis that follows is typically done with R-based tools installed within R.

Origin: biology/mca-calling
Category: biology
Size: 243B
License: NA
Maintainer: jwb@FreeBSD.org
Dependencies: 12 packages
Required by: 0 packages
Website: github.com/auerlab
$pkg install mca-calling

Dependencies (12)

vcf2hapvcf-splitsra-toolssamtoolsmawkliblz4haplohseqcurlbio-mochabedtoolsbcftoolsad2vcf

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