mca-calling

Core tools for Mosaic Chromosomal Alteration event calling

The mca-calling meta-port provides the core tools needed for performing a typical mCA (Mosaic Chromosomal Alteration) analysis, including conversion of SRA VCF files to a format suitable for haplohseq and MoCha, and haplohseq and MoCha event calling. The GWAS analysis that follows is typically done with R-based tools installed within R.