Jul 20, 2023

Perl Interface to G-language

BioGlite is an interface to G-language Genome Analysis Environment through its REST web service http//www.g-language.org. This module allows almost everything G-language GAE can do, without installing all necessary tookits and modules.

Advantage of this module over the standard installation of G-language GAE package is

  1. Easy installation from CPAN
  2. Extremely light-weight less than 1000 lines of code
  3. Does not require much CPU/RAM all calculation is done on the cloud

Disadvantages includes

  1. Slower analysis speed
  2. Internet connection is required
  3. No other software interfaces such as the G-language Shell

Checkout these related ports:
  • Wise - Intelligent algorithms for DNA searches
  • Wfa2-lib - Exact gap-affine algorithm using homology to accelerate alignment
  • Vt - Discovers short variants from Next Generation Sequencing data
  • Vsearch - Versatile open-source tool for metagenomics
  • Viennarna - Alignment tools for the structural analysis of RNA
  • Velvet - Sequence assembler for very short reads
  • Vcftools - Tools for working with VCF genomics files
  • Vcflib - C++ library and CLI tools for parsing and manipulating VCF files
  • Vcf2hap - Generate .hap file from VCF for haplohseq
  • Vcf-split - Split a multi-sample VCF into single-sample VCFs
  • Unikmer - Toolkit for nucleic acid k-mer analysis, set operations on k-mers
  • Unanimity - Pacific Biosciences consensus library and applications
  • Ugene - Integrated bioinformatics toolkit
  • Ucsc-userapps - Command line tools from the UCSC Genome Browser project
  • Trimmomatic - Flexible read trimming tool for Illumina NGS data