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P5-bio-glite
Jul 20, 2023
Perl Interface to G-language
BioGlite is an interface to G-language Genome Analysis Environment through its REST web service http//www.g-language.org. This module allows almost everything G-language GAE can do, without installing all necessary tookits and modules.
Advantage of this module over the standard installation of G-language GAE package is
- Easy installation from CPAN
- Extremely light-weight less than 1000 lines of code
- Does not require much CPU/RAM all calculation is done on the cloud
Disadvantages includes
- Slower analysis speed
- Internet connection is required
- No other software interfaces such as the G-language Shell
Checkout these related ports:
- Wise - Intelligent algorithms for DNA searches
- Wfa2-lib - Exact gap-affine algorithm using homology to accelerate alignment
- Vt - Discovers short variants from Next Generation Sequencing data
- Vsearch - Versatile open-source tool for metagenomics
- Viennarna - Alignment tools for the structural analysis of RNA
- Velvet - Sequence assembler for very short reads
- Vcftools - Tools for working with VCF genomics files
- Vcflib - C++ library and CLI tools for parsing and manipulating VCF files
- Vcf2hap - Generate .hap file from VCF for haplohseq
- Vcf-split - Split a multi-sample VCF into single-sample VCFs
- Unikmer - Toolkit for nucleic acid k-mer analysis, set operations on k-mers
- Unanimity - Pacific Biosciences consensus library and applications
- Ugene - Integrated bioinformatics toolkit
- Ucsc-userapps - Command line tools from the UCSC Genome Browser project
- Trimmomatic - Flexible read trimming tool for Illumina NGS data