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P5-bioperl
Jul 20, 2023
Collection of Perl modules for bioinformatics
The BioPerl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research.
BioPerl is a collection of object-oriented Perl modules created by the BioPerl Project. It forms the basis of a large number of bioinformatics and genomics applications.
For an interesting aside on “How Perl saved the Human Genome Project”, see http//www.bioperl.org/wiki/How_Perl_saved_human_genome
Checkout these related ports:
- Wise - Intelligent algorithms for DNA searches
- Wfa2-lib - Exact gap-affine algorithm using homology to accelerate alignment
- Vt - Discovers short variants from Next Generation Sequencing data
- Vsearch - Versatile open-source tool for metagenomics
- Viennarna - Alignment tools for the structural analysis of RNA
- Velvet - Sequence assembler for very short reads
- Vcftools - Tools for working with VCF genomics files
- Vcflib - C++ library and CLI tools for parsing and manipulating VCF files
- Vcf2hap - Generate .hap file from VCF for haplohseq
- Vcf-split - Split a multi-sample VCF into single-sample VCFs
- Unikmer - Toolkit for nucleic acid k-mer analysis, set operations on k-mers
- Unanimity - Pacific Biosciences consensus library and applications
- Ugene - Integrated bioinformatics toolkit
- Ucsc-userapps - Command line tools from the UCSC Genome Browser project
- Trimmomatic - Flexible read trimming tool for Illumina NGS data