samtools

1.22

Tools for manipulating next-generation sequencing data

Samtools implements various utilities for post-processing alignments in the SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction with bcftools), and a simple alignment viewer.

Origin: biology/samtools

Category: biology

Size: 1.16MiB

License: MIT

Maintainer: jwb@FreeBSD.org

Dependencies: 1 packages

Required by: 10 packages

Website: www.htslib.org

$pkg install samtools

Dependencies (1)

htslib

Required By (10 packages)

atac-seq augustus-gene-prediction biostar-tools btllib chip-seq dDocent mca-calling picard-tools py311-pysam rna-seq

More in biology

htslib1.22

C library for high-throughput sequencing data formats

p5-BioPerl1.007008

Collection of Perl modules for bioinformatics

biolibc0.2.7

Low-level high-performance bioinformatics library

bcftools1.22

Tools for manipulating next-generation sequencing data

bedtools2.31.1

Toolset for genome set arithmetic such as intersect, union

fastqc0.12.1

Quality control tool for high throughput sequence data

sra-tools3.3.0_2

NCBI's toolkit for handling data in INSDC Sequence Read Archives

bwa0.7.19

Burrows-Wheeler sequence aligner

libsbml5.20.5_1

API Library for Working with SBML File

py311-biopython1.85_2

Collection of Python modules for bioinformatics