FreeBSD.software
Home/biology/stacks

stacks

2.68

Software pipeline for building loci from short-read sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Origin: biology/stacks
Category: biology
Size: 7.42MiB
License: GPLv2
Maintainer: jwb@FreeBSD.org
Dependencies: 1 packages
Required by: 1 packages
Website: catchenlab.life.illinois.edu/stacks
$pkg install stacks

Dependencies (1)

python311

Required By (1 packages)

dDocent

Articles & Guides

comparisonBest Monitoring Tools for FreeBSD in 20262026-03-29comparisonFreeBSD Jails vs Docker: Container Isolation Compared2026-03-29comparisonFreeBSD vs Debian: Server Comparison for Sysadmins2026-03-29

More in biology

htslib1.22
C library for high-throughput sequencing data formats
p5-BioPerl1.007008
Collection of Perl modules for bioinformatics
samtools1.22
Tools for manipulating next-generation sequencing data
biolibc0.2.7
Low-level high-performance bioinformatics library
bcftools1.22
Tools for manipulating next-generation sequencing data
bedtools2.31.1
Toolset for genome set arithmetic such as intersect, union
fastqc0.12.1
Quality control tool for high throughput sequence data
sra-tools3.3.0_2
NCBI's toolkit for handling data in INSDC Sequence Read Archives
bwa0.7.19
Burrows-Wheeler sequence aligner
libsbml5.20.5_1
API Library for Working with SBML File