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Py-tifffile
Jul 20, 2023
Read and write TIFF(r) files
Tifffile is a Python library to
- store numpy arrays in TIFF Tagged Image File Format files, and
- read image and metadata from TIFF-like files used in bioimaging.
Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, STK, LSM, SGI, NIHImage, ImageJ, MicroManager, FluoView, ScanImage, SEQ, GEL, SVS, SCN, SIS, ZIF Zoomable Image File Format, QPTIFF QPI, NDPI, and GeoTIFF files.
Image data can be read as numpy arrays or zarr arrays/groups from strips, tiles, pages IFDs, SubIFDs, higher order series, and pyramidal levels.
Numpy arrays can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form.
A subset of the TIFF specification is supported, mainly 8, 16, 32 and 64-bit integer, 16, 32 and 64-bit float, grayscale and multi-sample images. Specifically, CCITT and OJPEG compression, chroma subsampling without JPEG compression, color space transformations, samples with differing types, or IPTC and XMP metadata are not implemented.
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