RECENT POSTS
- Introduction to FreeBSD Security Best Practices
- Working with Package Management in FreeBSD
- Understanding FreeBSD Security Advisories and Updates
- Troubleshooting Common System Administration Issues in FreeBSD
- Tips for Hardening FreeBSD to achieve System Protection
- Setting Up DHCP Server in FreeBSD
- Secure User and Group Management in FreeBSD Systems
- Secure Remote Access with SSH in FreeBSD
- Optimizing System Performance in FreeBSD
- Network Packet Capture with tcpdump in FreeBSD
- All posts ...
Do you have GDPR compliance issues ?
Check out Legiscope a GDPR compliance software, that will save you weeks of work, automating your documentation, the training of your teams and all processes you need to keep your organisation compliant with privacy regulations
Xmakemol
Jul 20, 2023
Molecule Viewer Program Based on Motif Widget
XMakemol is a program written for UN*X operating systems in ANSI C using the X, Xt and Motif libraries. It can be used to view and manipulate atomic and molecular data given in xyz format.
XMakemol is a mouse-based application and many features can be accessed by clicking or dragging the mouse on the main window. Additional popup dialogs offer a number of additional features.
Here is what an XMakemol session might look like. The system is a bucky ball and the Measure dialog is showing the measurement of bond-lengths, angles and a torsion angle.
XMakemol can produce output in PostScript black and white or colourand in xpm format which can be translated to gif format using xpmtoppm and ppmtogif.
XMakemol can also produce a series of xpm files which can be translated into an animated gif file using the bundled utility xmake_anim.pl formerly gmake_anim.pl. The one above is an animation of the “viagra” molecule sidenafil.
WWW http//www.nongnu.org/xmakemol/
Checkout these related ports:
- Zx - MQT ZX A library for working with ZX-diagrams
- Zotero - Reference management for bibliographic data and research materials
- Yoda - Particle physics package with classes for data analysis, histogramming
- Xtb - Semiempirical Extended Tight-Binding Program Package
- Xdrawchem - Two-dimensional molecule drawing program
- Xcrysden - Crystalline and molecular structure visualisation program
- Xcfun - Exchange-correlation functionals with arbitrary-order derivatives
- Wxmacmolplt - Graphical user interface principally for the GAMESS program
- Wwplot - Plotting tool for experimental physics classes
- Wannier90 - Maximally-localized Wannier functions (MLWFs) and Wannier90
- Votca - CSG and XTP libraries for atomistic simulations
- Voro++ - Three-dimensional computations of the Voronoi tessellation
- Vmd - Molecular visualization program
- Vipster - Crystalline and molecular structure visualisation program
- V_sim - Visualization of atomic structures