science
Scientific computing and research tools
511 packages — Page 3
This page covers py311-earthpy–R-cran-fastICA. Search all 511 packages →
Browse the complete collection of 511 FreeBSD science packages available in the ports tree. Every package can be installed with a single pkg install command. The most popular packages in this category include py311-scipy, hdf5, py311-scikit-learn. We have 2 guides covering science software on FreeBSD.
Most Popular
py311-scipy1.11.1_4,1Scientific tools for Python183 rdepshdf51.12.2_2,1Hierarchical Data Format library (from NCSA) (latest)87 rdepspy311-scikit-learn1.7.2Machine learning algorithms for python47 rdepslibaec1.1.4Adaptive entropy coding library41 rdepsnetcdf4.9.3C library for machine-independent, array-oriented data access33 rdeps
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150 results
py311-earthpy0.9.4_5
Plot and manipulate spatial data in Pythonpy311-eccodes2.44.0
Python interface to the ecCodes BUFR and GRIB de/encoder1 rdepspy311-emmet-core0.64.0_1
Materials API Toolkit for the Materials Project1 rdepspy311-esda2.8.0
Exploratory Spatial Data Analysis4 rdepspy311-gemmi0.7.3
Macromolecular crystallography library and utilitiespy311-geolinks0.2.3_1
Utilities to deal with geospatial links1 rdepspy311-geomet1.1.0
GeoJSON <-> WKT/WKB conversion utilitiespy311-geometer0.4.2
Python geometry package based on projective geometry and numpypy311-geometric1.1_2
Geometry optimization for quantum chemistrypy311-gpaw24.6.0_4
DFT and beyond within the projector-augmented wave method in chemistrypy311-GPy1.13.2_1
Gaussian process toolbox1 rdepspy311-GPyOpt1.2.6_2
Bayesian optimization toolbox based on GPypy311-gsd3.4.1_1
GSD (General Simulation Data) file format for Python1 rdepspy311-h5json1.1.3_2
Tools and library for representing HDF5 in JSONpy311-h5netcdf1.6.1
netCDF4 via h5py1 rdepspy311-h5py3.15.1
General-purpose Python interface to the HDF5 library33 rdepspy311-h5pyd0.18.0_1
h5py compatible client lib for HDF REST APIpy311-HepMC33.3.0
Event record for High Energy Physics Monte Carlo generators/simulationpy311-hiPhive1.5
High-order force constants for the massespy311-HofstadterTools1.0.4_1
Package for analyzing the Hofstadter model of particles in the latticepy311-hoomd-blue6.0.0
Molecular dynamics and Monte Carlo soft matter simulationpy311-icet3.2
Pythonic approach to alloy cluster expansionspy311-inequality1.1.2
Spatial inequality analysis for PySAL1 rdepspy311-ipygany0.5.0_4
3-D scientific visualization in Jupyter Notebooks1 rdepspy311-jupyter-jsmol2022.1.0_3
JSmol viewer widget for Jupyter Notebooks and JupyterLabpy311-kim-query3.0.0_1
Helper routines for querying the OpenKIM repositorypy311-kimpy2.1.3
Python interface to the KIM-API1 rdepspy311-kinematics0.1.7_2
Python module to do attitude kinematicspy311-kliff0.4.4_1
KIM-based Learning-Integrated Fitting Frameworkpy311-kpLib1.1.1_3
Library for finding optimal Generalized Monkhorst-Pack k-points gridpy311-liac-arff2.5.0_1
Read and write ARFF files in Pythonpy311-libgetar1.1.7_1
Library to read and write GEneric Trajectory ARchivespy311-libpysal4.13.0
Core components of PySAL A library of spatial analysis functions16 rdepspy311-lifelines0.19.5_4
Survival analysis in Pythonpy311-MDAnalysis2.7.0_2
Python library to analyze molecular dynamics trajectories1 rdepspy311-MDAnalysisTests2.7.0_2
Test code and the trajectory data for test cases of MDAnalysispy311-mdp3.5_5
Modular toolkit for Data Processingpy311-mercantile1.2.1_1
Web mercator XYZ tile utilities1 rdepspy311-meshio5.3.5
I/O for many mesh formats2 rdepspy311-mmcif0.90.0_1
mmCIF Core Access Librarypy311-mmtf-python1.1.3_2
MMTF (Macromolecular Transmission Format) Python API1 rdepspy311-mne1.11.0_1
Python project for MEG and EEG data analysispy311-molmod1.4.8_2
Collection of molecular modelling tools for pythonpy311-mp-api0.34.0_2
API for server for the Materials Projectpy311-mpcontribs-client5.10.1_2
Client library for MPContribs API on contribs-api.materialsproject.org1 rdepspy311-mplhep0.3.59_1
Matplotlib styles for HEPpy311-mplhep-data0.0.4
Font (Data) sub-package for mplhep1 rdepspy311-mrchem1.1.4
MultiResolution Chemistrypy311-ncrystal4.2.8
Library for thermal neutron transport in crystals and other materialspy311-neo0.14.3
Package for representing electrophysiology data in Pythonpy311-netcdf-flattener1.2.0_2
Flatten NetCDF files while preserving referencespy311-netCDF41.7.2
Python Interface to the NetCDF Library (versions 3 and 4)8 rdepspy311-nglview4.0_1
IPython widget to view molecular structures and trajectories1 rdepspy311-nibabel5.3.2
Read/write some common neuroimaging file formats1 rdepspy311-obspy1.4.2_3
Python framework for seismological observatoriespy311-oddt0.7_3
Open Drug Discovery Toolkitpy311-openbabel3.1.1.1_1
Chemical toolbox designed to speak the many languages of chemical datapy311-openEMS0.0.36_1
Electromagnetic field solver using the EC-FDTD methodpy311-OpenFermion1.7.1_1
Electronic structure package for quantum computers2 rdepspy311-OpenFermion-Diracg20220812_3
Interface between OpenFermion and Diracpy311-openpiv0.25.3
Python module for Particle Image Velocimetrypy311-optking0.3.0_3
Python version of the PSI4 geometry optimization program by R.A. King1 rdepspy311-paida3.2.1.2.10_2
Pure Python scientific analysis packagepy311-paramz0.9.6_1
Parameterization framework1 rdepspy311-penaltymodel1.3.0
DWave: Utilities and interfaces for using penalty models2 rdepspy311-periodictable2.0.2
Extensible periodic table of the elements pre-populated with datapy311-phono3py3.9.0_2
Software to calculate phonon-phonon interaction and related propertiespy311-phonopy2.42.0_2
Package for phonon calculations at harmonic and quasi-harmonic levels3 rdepspy311-pnetcdf1.0.0_1
Object-oriented python interface to the PnetCDF librarypy311-PubChemPy1.0.4_1
Simple Python wrapper around the PubChem PUG REST API1 rdepspy311-pupynere1.0.15_10
NetCDF file reader and writerpy311-py-OpenFermion-PySCF0.5_3
Interface between OpenFermion and PySCFpy311-py3Dmol2.4.2_1
IPython interface for embedding 3Dmol.js viewspy311-pyaixi1.0.4_2
Implementation of the MC-AIXI-CTW AI algorithmpy311-pyberny0.6.3_2
Optimizer of molecular geometries with respect to the total energypy311-pycsw2.6.2_2
OGC CSW server implementationpy311-pydicom3.0.1
Read, modify, and write DICOM files with Python codepy311-PyFR2.1
Framework for solving advection-diffusion type problemspy311-pygeodesy23.4.23_1
Pure Python geodesy toolspy311-pygeometa0.15.3_5
Generate metadata for geospatial datasetspy311-pygmo22.19.7_8
Python platform to perform parallel computations of optimisation tasks1 rdepspy311-pyked0.4.1.16_4
Package for manipulating Chemical Kinetics Experimental Data filespy311-pymatgen2025.10.7
Python Materials Genomics is a robust materials analysis code5 rdepspy311-pymatgen-analysis-alloys0.0.7_1
PyMatgen add-on library with classes useful for describing alloys1 rdepspy311-pymbd0.12.5_2
Many-body dispersion librarypy311-pymol3.0.0_2
OpenGL-based molecular visualization systempy311-pynn0.12.3_1
Simulator-independent language for building neuronal network modelspy311-pynrrd1.1.3
Pure Python module for reading and writing NRRD filespy311-pyosf1.0.5_1
Python library for synching with OpenScienceFramework projectspy311-pyphot1.6.0
Library for computing photometry from spectrapy311-pyqubo1.4.0_3
DWave: Python DSL for constructing QUBOs from mathematical expressionspy311-pysal25.7
Meta Package for PySAL - A library of spatial analysis functionspy311-pyscf2.8.0_2
Python module for quantum chemistry2 rdepspy311-pyteomics4.7.5_3
Python modules for proteomics data analysispy311-qcelemental0.29.0_1
Essentials for quantum chemistry3 rdepspy311-qcengine0.30.0_4
Quantum chemistry program executor and IO standardizer (QCSchema)2 rdepspy311-qiskit2.2.1_2
Open-source SDK for working with quantum computerspy311-qspin2.3.3_1
Learn quantum spin and entanglementpy311-quantities0.16.2
Support for physical quantities with units, based on numpy2 rdepspy311-rmf1.7.0
Library to support reading and writing of Rich Molecular Format filespy311-rmsd1.6.3_1
Calculate root-mean-square deviation (RMSD) between coordinate sets1 rdepspy311-ruffus2.8.4_1
Lightweight library for computational pipelinespy311-sarpy1.3.62
Read, write and process complex SAR and other associated datapy311-scikit-fuzzy0.5.0_1
Fuzzy logic toolkit for SciPypy311-scikit-learn1.7.2
Machine learning algorithms for python47 rdepspy311-scikit-optimize0.10.2
Sequential model-based optimization toolboxpy311-scikit-sparse0.4.16_2
Sparse matrix package1 rdepspy311-scimath5.0.0_2
Scientific and Mathematical calculationspy311-scipy1.11.1_4,1
Scientific tools for Python183 rdepspy311-scoria1.0.5_2
Lightweight molecule manipulation codebasepy311-sdf0.1_4
Simple SDF mesh generation in Pythonpy311-seekpath2.1.0_1
Obtain, visualize k-vector coefficients in crystal Brillouin zone1 rdepspy311-segregation2.5.3
Analytics for spatial and non-spatial segregation in Python2 rdepspy311-segyio1.9.13_1
Python binding for segyio, the seismic data librarypy311-signac2.2.0
Manage large and heterogeneous data spaces on the file systempy311-SimpleSpectral1.0.0_4
Simplified scipy.signal.spectral module with only pyFFTW support1 rdepspy311-sklearn-pandas2.2.0_2
Pandas integration with sklearnpy311-skrebate0.62_2
Relief-based feature selection algorithmspy311-spaghetti1.7.6
Analysis of Network-constrained Spatial Data2 rdepspy311-spglib2.6.0
Library for finding and handling crystal symmetries (python binding)9 rdepspy311-symfc1.3.1
Generate symmetrized force constants1 rdepspy311-tensorflow2.13.1
Computation using data flow graphs for scalable machine learning2 rdepspy311-thewalrus0.21.0_1
Open source library for hafnian calculationpy311-tobler0.12.1
Areal Interpolation2 rdepspy311-trainstation1.1_1
Convenient training of linear models2 rdepspy311-trx-python0.3
Experiments with new file format for tractography1 rdepspy311-tweedledum1.1.1.20221123_1
Library for analysis, compilation, synthesis of quantum circuitspy311-vedo2025.5.4
Python module for scientific analysis and visualization of 3D objectspy311-veusz4.2
Scientific plotting packagepy311-xbout0.3.5_4
Collect data from BOUT++ runs in python using xarraypybrain0.3.3_6
Swiss Army knife for neural networkingq6.0_1
Molecular Dynamics (MD) toolsqbox1.78.4_1
First-principles molecular dynamics codeqcl0.6.7
Quantum computer simulatorqiskit-aer0.16.0.1_3
Quantum circuits simulator submodule of the Qiskit frameworkqmcpack4.1.0
Many-body ab initio Quantum Monte Carlo code for quantum chemistryqt6-quick3dphysics6.10.1
High-level API for physics simulation1 rdepsquantum-espresso7.5
Package for research in electronic structure, simulation, optimization1 rdepsquantum-espresso-pseudopotentialsg20220916
Pseudopotentials for use with Quantum Espressoquantum-jet0.2.2.2_4
Cross-platform header-only library for simulating quantum circuitsqwalk1.0.1.300_6
Quantum Monte Carlo package for quantum chemistry computationsR-cran-bayesm3.1.6
Bayesian Inference for Marketing/Micro-econometricsR-cran-cmprsk2.2.12
Subdistribution Analysis of Competing Risks1 rdepsR-cran-DCluster0.2.10
Functions for the detection of spatial clusters of diseasesR-cran-e10711.7.17
Misc Functions of the Department of Statistics (e1071), TU Wien3 rdepsR-cran-Epi2.61
Package for statistical analysis in epidemiologyR-cran-epicalc2.15.1.0_12
Epidemiological calculatorR-cran-etm1.1.2
Empirical Transition Matrix1 rdepsR-cran-FAdist2.4_1
Probability distributions that are sometimes useful in hydrologyR-cran-fastICA1.2.7
FastICA Algorithms to Perform ICA and Projection Pursuit1 rdeps